Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs55987418 chr7:36158682 G/A 0.000433 178 25.77 24.5 14.37 KM Plot
PCPG rs55999124 chr2:241528389 G/A 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs56024380 chr2:233144018 G/A 3.75E-5 176 25.77 24.7 9.13 KM Plot
PCPG rs56042931 chr13:54064473 A/T 0.000258 176 25.47 20.47 3.17 KM Plot
PCPG rs56046837 chr1:244153386 C/T 0.000371 170 27.47 20.2 15.8 KM Plot
PCPG rs56048642 chr16:88684579 G/A 0.000342 176 25.53 24.35 14.47 KM Plot
PCPG rs56055535 chr7:105163574 C/A 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs56060357 chr17:80519571 G/A 4.21E-5 178 25.97 19.72 7.2 KM Plot
PCPG rs56065313 chr16:1761864 A/G 7.13E-5 173 25.53 15.85 17.77 KM Plot
PCPG rs56067442 chr8:135491811 C/T 0.000123 176 25.4 24.7 21.35 KM Plot
PCPG rs56090599 chr16:85229227 A/G 6.0E-5 170 25.47 32.6 15.8 KM Plot
PCPG rs56107456 chr8:1757248 G/A 1.21E-5 175 25 25.4 25.17 KM Plot
PCPG rs56114955 chr10:50598420 T/C 4.15E-6 177 24.52 33.13 25.17 KM Plot
PCPG rs56144672 chr7:105175745 C/T 7.98E-5 171 20.2 29.88 2.28 KM Plot
PCPG rs56165245 chr10:50548473 C/T 3.73E-6 177 24.53 34.37 25.17 KM Plot